Publications

Jiang, SY and S Ramachandran: Rice Functional Genomics: A review on Mutant Resources and their applications. In Genomics and Proteomics. Bioscience Publications, in press.

Ramamoorthy, R, SY Jiang, N Kumar, P Venkatesh and S Ramachandran: A Comprehensive Transcriptional Profiling of the WRKY Gene Family in Rice under Various Abiotic and Phytohormone Treatments. Plant and Cell Physiology 49: 865-879 (2008).

Jiang, S-Y, R Ramamoorthy, R Bhalla, H-F Luan, PN Venkatesh, M Cai and S Ramachandran: Genome-wide survey of the RIP domain family in Oryza sativa and their expression profiles under various abiotic and biotic stresses. Plant Molecular Biology 67: 603-614 (2008).

Jiang, S-Y, R Rengasamy and S Ramachandran: Comparative transcriptional profiling and evolutionary analysis of the GRAM domain family in eukaryotes. Developmental Biology 314: 418-432 (2008).

Zhu, QH, MY Eun, CD Han, CS Kumar, A Pereira, S Ramachandran, V Sundaresan, AL Eamens, M Upadhyaya and R Wu: Transposon Insertional Mutants: A Resource For Rice Functional Genomics. In Rice Functional Genomics: Challenges, Progress and Prospects (ed. NM Upadhyaya) Springer: 223-272 (2007).

Jiang, S-Y, D Bachmann, H La, Z Ma, PN Venkatesh, R Ramamoorthy and S Ramachandran: Ds insertion mutagenesis as an efficient tool to produce diverse variations for rice breeding. Plant Molecular Biology 65: 385-402 (2007).

Jiang, S-Y, M Cai and S Ramachandran: ORYZA SATIVA MYOSIN XI B controls pollen development by photoperiod-sensitive protein localizations. Developmental Biology 304: 579-592 (2007).

La, H, J Li, Z Ji, Y Cheng, X Li, S Jiang, PN Venkatesh and S Ramachandran: Genome-wide analysis of cyclin family in rice (Oryza Sativa L.). Molecular Genetics and Genomics 275: 374-386 (2006).

Jiang, S and S Ramachandran: Comparative and evolutionary analysis of genes encoding small GTPases and their activating proteins in eukaryotic genomes. Physiological Genomics 24 : 235-251 (2006).

Szeverenyi, I, R Ramamoorthy, ZW Teo, HF Luan, ZG Ma and S Ramachandran: Large scale systematic study on stability of Ds element and timing of transposition in rice. Plant and Cell Physiology 47: 84-95 (2006).

Jiang, SY, JXH Phua, YT Yeo and S Ramachandran: Genome-wide Identification and Molecular Characterization of Ole_e_I, Allerg_1 and Allerg_2 Domain-containing Pollen-Allergen-like Genes in Oryza sativa. DNA Research 12 : 167-179 (2005).

Jiang, SY, M Cai and S Ramachandran: The Oryza sativa no pollen (Osnop) gene plays a role in male gametophyte development and most likely encodes a C2-GRAM domain-containing protein. Plant Molecular Biology 57 : 835-853 (2005).

Hirochika H, E. Guiderdoni , G. An , Y.I. Hsing, M.Y. Eun, C.D. Han, N. Upadhyaya, S. Ramachandran, Q. Zhang, A. Pereira, V. Sundaresan and H. Leung. 2004. Rice mutant resources for gene discovery. Plant Molecular Biology 54 : 325-34.

Jiang, S. and S. Ramachandran. 2004. Identification and molecular characterization of myosin gene family in Oryza sativa genome. Plant & Cell Physiology 45 : 590-599.

Kolesnik, T., I. Szeverenyi, D. Bachmann, C.S. Kumar, S. Jiang, R. Ramamoorthy, M. Cai, Z.G. Ma, V. Sundaresan and S. Ramachandran. 2004. Establishing an efficient Ac/Ds tagging system in rice: large-scale analysis of Ds flanking sequences. The Plant Journal 37 : 301-314.

Chun-Hai Dong, Gui-Xian Xia, Yan Hong, Srinivasan Ramachandran, Benedikt Kost and Nam-Hai Chua (2001). ADF proteins are involved in the control of flowering and regulate F-actin organization, cell expansion and organ growth in Arabidopsis. The Plant Cell 13: 1333-1346.

Srinivasan Ramachandran and Venkatesan Sundaresan (2001). Transposons as tools for functional genomics. Plant Physiol. Biochem. 39: 243-252.

Srinivasan Ramachandran, Hans EM Christensen, Yasuko Ishimaru, Chun-Hai Dong, Wen Chao-Ming, Ann Cleary and Nam-Hai Chua (2000). Profilin plays a role in cell elongation, cell shape maintenance and flowering in Arabidopsis thaliana. Plant Physiology 124: 1637-1647.

Guixian Xia, Srinivasan Ramachandran, Yan Hong, Yang-Sun Chan, Viesturs Simanis and Nam-Hai Chua (1996). Identification of plant cytoskeletal, cell cycle-related and polarity-related proteins using Shizosaccharomyces pombe. Plant Journal 10: 761-769.

Hans EM Christensen, Srinivasan Ramachandran, Chio-Tee Tan, Uttam Surana, Chun-Hai Dong and Nam-Hai Chua (1996). Arabidopsis profilins are functionally similar to yeast profilins: identification of a vascular bundle-specific profilin and a pollen-specific profilin. Plant Journal 10 : 269-279.

Srinivasan R and Oliver DJ (1995). Light-dependent and tissue-specific expression of the H-protein of the glycine decarboxylase complex. Plant Physiology 109 : 161-168.

Srinivasan Ramachandran, Kazuyuki Hiratsuka and Nam-Hai Chua (1994) Transcription factors in plant growth and development. Current Opinions in Genetics and Development 4: 642-646